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Alkaloid biosynthesis

Our new 2023 articles

The Rauvolfia tetraphylla genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids in monoterpene indole alkaloid synthesis

Our results published in Communications Biology, a Portfolio Nature journal, pave the way towards alkaloid bioproduction in yeast, and among them, yohimbine, rauwolscine, corynathine (and their derivatives), therapetuic molecules with selective affinity for α2-adrenergic and α1-adrenergic receptors,

Biosynthesis of natural and halogenated plant monoterpene indole alkaloids in yeast

Published in Nature Chemical Biology, this collaborative work demonstrates a scalable de novo manufacturing platform for bioactive monoterpenoid indole alkaloids (MIAs, plant metabolites that possess various medicinal properties) in yeast and provides a foundation for further pathway refactoring toward microbial biosynthesis of both native and new-to-nature MIAs.

Medicinal plants enter the single-cell multi-omics era

Our new spotlight published in Trends in Plant Science, on a report by Li et al on single-cell multi-omics approach used to elucidate the architecture and regulation of anticancer alkaloid biosynthesis in medicinal plants.

Gaining access to acetyl-CoA by peroxisomal surface display.

A focus on Yocum and collaborator work who have developed an outstanding approach based on the anchoring of biosynthetic enzymes to the peroxisomal membrane.

Spatial localization of monoterpenoid indole alkaloids in Rauvolfia tetraphylla by high resolution mass spectrometry imaging

In this study published in Phytochemistry, we explore how matrix assisted laser desorption ionization (MALDI) and desorption electrospray ionization (DESI) mass spectrometry imaging (MSI) can be used in the investigation of a proposed biosynthetic pathway by localizing reserpine and the theoretical intermediates of it

Convergent evolution for antibiotic biosynthesis in bacteria and animals

A spotlight in Trends in genetics about the convergent evolution for antibiotic biosynthesis in bacteria and animals.


Our topics :

The alkaloid group focuses its research on the Monoterpene Indole Alkaloids (MIAs), one of the prominent examples of plant specialized metabolites used in our current pharmacopeia. Almost all MIAs derive from the common precursor strictosidine that is further metabolized to yield the plethora of MIAs accumulated in Apocynaceae, Rubiaceae, Nyssaceae, and Loganiaceae. Among MIAs, vinblastine and vincristine, both specific to the Madagascar periwinkle (Catharanthus roseus) are widely exploited in anticancer treatments. The supply of these compounds mostly relies on plant culture and on the extraction of their two precursors, vindoline and catharanthine, from C. roseus leaves, which are further condensed to produce the active compounds.

pathway
Figure from Lemos Cruz et al. (2021 ;doi:
10.3390/molecules26123596 ) : Vinblastine and vincristine production via semi-synthetic synthesis.
    (A) Illustration of the semi-synthetic synthesis of vinblastine and vincristine. (B) Tabersonine and catharanthine biosynthesis from strictosidine.
     (C,D) Tabersonine bioconversion in planta (C): by-product vindorosine biosynthesis. (D): vindoline biosynthesis).
                     Solid line: one enzymatic step, discontinuous line: more than one enzymatic step.


Therefore, MIAs supply is obviously highly dependent on plant growth and suffers from recurrent shortages. There‘s a need to develop new strategies to produce these highly molecules. Synthetic biology coupled to metabolic engineering is a valuable solution relying on the transfer of large biosynthetic pathways in heterologous organisms. The resulting bioproduction in microbial cell factories is thus a promising alternative approach to ensure pharmaceutical compound supply. It can be achieved through de novo synthesis or bioconversion of precursors fed to yeast. However, in both cases, it requires the elucidation of the biosynthetic pathways of interest and unfortunately most MIA chemicals do not have their biosynthetic pathways elucidated.
 

tailoring

Figure adapted from Kulagina et al. (2021 ;https://doi.org/10.1111/1751-7915.13898
Tailoring yeast cell factories for vindoline production.
Vindoline biosynthetic pathway and parallell branch vindorosine pathway

Our aims are:

  • To elucidate or complete the architecture of MIA biosynthesis pathway at molecular and cellular levels in C. roseus but also other MIA producing species as for example Vinca minor.
  • To reconstitute pathway in yeast for alkaloid production
  • to optimize their production in microbial cell factories to industrial scale
  • to identify new enzyme activities to enlarge the chemical diversity through the formation of new-to-nature MIAs through the mix-up of interspecies enzymes in heterologous organisms.
KEYWORDS : medicinal plants ; alkaloids ; natural products ; biosynthetic pathway : synthetic biology ; metabolic engineering ; bioproduction ; yeast
 
ntn
Figure from Courdavault  et al. (2021 ;DOI: 10.1039/d0np00092b
a benchmark procedure to produce plant natural products in microbial cell factories